PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18960.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 319aa    MW: 35361.5 Da    PI: 7.4728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.8e-16131177455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Vang01g18960.1 131 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 177
                     5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-20124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.765127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-18130181No hitNo description
PfamPF000101.8E-13131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
LISQLSSSMA GDMHQPQSSL GRTFPPNSED FSTFFNQLLH NPPTPGMDPN HSASDFTPNN  60
LNNNNPVPSS PSTFHFSQPH HYIPATDANT FKQHNNNHNP DFTSSSEKSV EATKPVPPPR  120
SSSKRSRAAE FHNLSEKRRR SRINEKMKAL QNLIPNSNKT DKASMLDEAI EYLKQLQLQV  180
QMLMMRNGLS LHPMSLPGEL RPVIMPQTGL NLDESDGLQN STSAIASSSN EESLVRHAFS  240
FPKQCSISDQ SHVVPSVTSL ATSNAPSTFH PSIKYFIVLI YVELNNSWCN MKDTLYNNMP  300
QLFMDAPKIG KNPSSDLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-179AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429237.10.0PREDICTED: transcription factor ALC-like isoform X1
TrEMBLA0A0L9V1M40.0A0A0L9V1M4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPW60.0A0A0S3RPW6_PHAAN; Uncharacterized protein
STRINGXP_007160864.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-29bHLH family protein