PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g18310.3 | ||||||||
Common Name | LR48_Vigan07g262500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 98aa MW: 11756.6 Da PI: 12.2527 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.8e-10 | 11 | 55 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ rr+q+NR +ArrsR RKk +e+L++ + L eN++Lk++l Vang01g18310.3 11 RKLRRMQSNRDSARRSRWRKKRHLENLTNQANRLRMENRELKNRL 55 5789**************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-8 | 7 | 71 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.094 | 9 | 55 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.74E-10 | 11 | 63 | No hit | No description |
Pfam | PF00170 | 4.4E-8 | 11 | 55 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-8 | 11 | 62 | No hit | No description |
CDD | cd14702 | 2.87E-10 | 12 | 61 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 14 | 29 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
LNRVVRSTHE RKLRRMQSNR DSARRSRWRK KRHLENLTNQ ANRLRMENRE LKNRLCLTMH 60 QNLLLSLENE RLRSESVTLM ATLSNLYQIL ATMISQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g18310.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-163 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429986.1 | 4e-61 | PREDICTED: bZIP transcription factor 2-like | ||||
TrEMBL | A0A0L9V1T9 | 7e-60 | A0A0L9V1T9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPV2 | 8e-60 | A0A0S3RPV2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160935.1 | 4e-50 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22850.2 | 2e-16 | basic leucine-zipper 6 |
Publications ? help Back to Top | |||
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