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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang01g18250.1 |
Common Name | LR48_Vigan07g261900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
AP2 |
Protein Properties |
Length: 691aa MW: 75623 Da PI: 7.3268 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang01g18250.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 38.9 | 2.1e-12 | 338 | 394 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g
Vang01g18250.1 338 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 394
78*******************77776664346655.77******************98 PP
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2 | AP2 | 45.2 | 2.4e-14 | 439 | 488 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
Vang01g18250.1 439 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 488
9***************988532...5************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007276 | Biological Process | gamete generation |
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
GO:0042127 | Biological Process | regulation of cell proliferation |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 691 aa
Download sequence Send
to blast |
MKSMNDGNAD DGNNHNWLGF SLSPHMKMEI TSSADPPHHH HHHFYHHPQV SAAAAPCNTV 60 PTGFYISPSH LNPSGICYGV GENGAFHPPL AMMPLKSDGS LCIMEALTRS QTPVYILRGF 120 CGLVEVMVPT TSPKLEDFLG GASMGAQEYG GHEREAMALS LDSVYYSSQN AEPEANRGHP 180 SSLGLLSDPF RQQTHPYYSG LGIYHVEEEA KQPHVTVCSS QMPQVVEEGV ACFKNWVPPR 240 GYSSTQQNPE QQQVNNSSGM GEGHGTSGNA GVGCGELQSL SLSMSPGSQS SCVTVPTQIS 300 SSRTESVAGD AKKRGSAKLG QKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS 360 CKKEGQTRKG RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQTEL EEMKNMSRQE 420 YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD 480 VAAIKFRGVN AVTNFDISRY DVERIMASNT LLAGELARRN KESEPRTEAV EYNGVSSQQE 540 AETVNNNENN EKGSSDWKMG LYHQQQQQSN NNCDMKTMKC GNYRGSAFSV SLQDLIGIDS 600 VGSSQAMLEE STKIGAHFSN PSSLVTSLSS SREGSPDKTG PTMLFPKPPV GSKVVTSPIA 660 NGVSVSSWFP SQMRPVSMSH LPVFAAWSDT *
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |