PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 263aa MW: 28802.5 Da PI: 4.5915

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g16450.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.6	1.1e-16	39	88	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGVr++ +g+WvAeIr+p + r +r +lg++ t eAa a++ a+++l+g Vang01g16450.1 39 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYETSVEAAMAYDCAARQLYG 88 69**999.******8...3.35*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.28E-28	38	98	No hit	No description
PROSITE profile	PS51032	21.219	39	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-20	39	97	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-31	39	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-8	40	51	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.4E-29	40	97	IPR001471	AP2/ERF domain
Pfam	PF00847	3.4E-12	40	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-8	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MLTSGMRMNA SKQVKKSAKA SSRKGCMRGK GGPENASCTF KGVRQRTWGK WVAEIREPNR 60 GARLWLGTYE TSVEAAMAYD CAARQLYGSD AKLNLPDLAM ALAFNFQFPP PSPQIPHMQP 120 SPQLQHSQIP SPYDIFNLPS FDFINNLTDD TNIMFNPVLS MPPQHAIADS APVYASDSHV 180 AVPYENTTIP MAIHPSNPLE INEDTVDPFG GSFNDIPDPM FDDSIWAEAA RSLDFPLIPD 240 AAGINEAETF LEVGPWDSLQ TP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	8e-17	40	96	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	9e-17	40	96	6	63	ATERF1
3gcc_A	9e-17	40	96	6	63	ATERF1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00240	DAP	Transfer from AT1G75490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g16450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428963.1	0.0	PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBL	A0A0L9V2L6	0.0	A0A0L9V2L6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RQG1	0.0	A0A0S3RQG1_PHAAN; Uncharacterized protein
STRING	XP_007160709.1	1e-125	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2562	33	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75490.1	3e-43	ERF family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]