PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g16330.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 299aa MW: 31961.8 Da PI: 7.197

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g16330.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223	5.9e-69	125	276	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel..kskkqsalsstklssa 94 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla ++++++ + + ++skr+re+ ++ +l+++ ++ + Vang01g16330.1 125 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAVLQQQNQPPQfRGDHSKRHRESieGVAAGGSLACAPVPIT 219 5789*************************************************9988776555599999999998434455666777777766 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + + le+ ++P+e++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++ Vang01g16330.1 220 T--TGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVD 276 5..569999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.7E-65	127	276	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.0E-26	129	171	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.6E-25	227	275	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAGFFSLGGR HNKAEDEEDH REDNNNNNNN NSQFLFRNVN DEIYNTNKGF EIWPQSSYHH 60 NFTNYYSFGV GPSRRNNTAN NSSSNNVNDD VSVSFSDESN RFGFTVMRSG GGVGGGGGGV 120 GGGGGGGMNC QDCGNQAKKD CSHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAV 180 LQQQNQPPQF RGDHSKRHRE SIEGVAAGGS LACAPVPITT TGLEVGQFPP ELNSPAVFRC 240 VKVSAMDAPD ERYAYQTAVN IGGHVFKGIL YDQGVDGPYA SAGCEGSSGG GAEVAATS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g16330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429667.1	1e-164	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9FXH7	4e-78	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A0L9V2L9	1e-162	A0A0L9V2L9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RQF6	1e-162	A0A0S3RQF6_PHAAN; Uncharacterized protein
STRING	XP_007160701.1	1e-149	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-67	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]