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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vang01g16330.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
SRS |
| Protein Properties |
Length: 299aa MW: 31961.8 Da PI: 7.197 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang01g16330.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 223 | 5.9e-69 | 125 | 276 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel..kskkqsalsstklssa 94
g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla ++++++ + + ++skr+re+ ++ +l+++ ++ +
Vang01g16330.1 125 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAVLQQQNQPPQfRGDHSKRHRESieGVAAGGSLACAPVPIT 219
5789***************************************************9988776555599999999998434455666777777766 PP
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+ + le+ ++P+e++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++
Vang01g16330.1 220 T--TGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVD 276
5..569999************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MAGFFSLGGR HNKAEDEEDH REDNNNNNNN NSQFLFRNVN DEIYNTNKGF EIWPQSSYHH 60
NFTNYYSFGV GPSRRNNTAN NSSSNNVNDD VSVSFSDESN RFGFTVMRSG GGVGGGGGGV 120
GGGGGGGMNC QDCGNQAKKD CSHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAV 180
LQQQNQPPQF RGDHSKRHRE SIEGVAAGGS LACAPVPITT TGLEVGQFPP ELNSPAVFRC 240
VKVSAMDAPD ERYAYQTAVN IGGHVFKGIL YDQGVDGPYA SAGCEGSSGG GAEVAATS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
