PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g15560.1 | ||||||||
Common Name | LR48_Vigan07g249400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 269aa MW: 30370.6 Da PI: 8.458 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.7 | 4.9e-28 | 107 | 165 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ k++ pr+Y+rC++a Cp+kkkv+r+ +d+++++ tY geHnh Vang01g15560.1 107 VKDGYQWRKYGQKVTKDNASPRAYFRCSMApICPAKKKVQRCLHDKSILVATYDGEHNH 165 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-28 | 100 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-24 | 101 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.72 | 102 | 168 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-32 | 107 | 167 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-23 | 108 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MLVQVLNTAV IMDVKVESLK SELKRVREEN NTLRVMFEVL SSKYTKLESH LQEINKEQHK 60 GMSSNQIGSV TEPILDVNNR RRLEFPTAKK PLQIFVRTHP MDDSLIVKDG YQWRKYGQKV 120 TKDNASPRAY FRCSMAPICP AKKKVQRCLH DKSILVATYD GEHNHGALHE PSSSTPRGSS 180 VANQLPSIAN DKEAMNILAL SGLSQTDRRH GEVMNQHNYD TNIKVEEYVS SLIKDPDFTM 240 SLAEAVARTI TGELKQQDIN LNLNIPEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 93 | 165 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g15560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429635.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0L9V0Y0 | 0.0 | A0A0L9V0Y0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RPE5 | 0.0 | A0A0S3RPE5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161093.1 | 1e-163 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 8e-43 | WRKY DNA-binding protein 40 |
Publications ? help Back to Top | |||
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