PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g13950.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 637aa    MW: 71638.3 Da    PI: 5.8088
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g13950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.76e-1292706272361
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ecA+a+s+g+ e+a++++++l++++s +g+p qR+aay++e+Laar+a+s++ +y+al+++e +   ss++laa+++++ev+P++kf+++
  Vang01g13950.1 270 KQLLYECARALSEGNEEQAKSMINNLRQMVSIQGEPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPP---SSDRLAAMQILFEVCPCFKFGFI 361
                     589*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI+eav  e++vHiiDfdisqG+Q+++L+qaLas p+  p++R+Tgv++pe++  s   ++ +g+rL+k+Aeelg++fef++ va++++ +
  Vang01g13950.1 362 AANGAIVEAVRDEKKVHIIDFDISQGTQYITLIQALASMPGRRPHVRLTGVDDPETVqrSVGGMNIIGKRLEKLAEELGLSFEFRA-VASKTSIV 455
                     *******************************************************99889999***********************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+++pgEal+Vn+++qlh++ de+vs+ +erd++L++vk l+Pk+v++veq++++n+++Fl+rf+ea +yysa+fd+l+a+lpres++r++
  Vang01g13950.1 456 SPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQDRMN 550
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                     vEr++l+++ivn+vaceg++r+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ + + d ++++ee+g+l +g
  Vang01g13950.1 551 VERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFTPCPMSTNVREAIRKLIITQYCDRFKIKEEKGALHFG 627
                     ***********************************************************99888********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.124243620IPR005202Transcription factor GRAS
PfamPF035142.1E-126270627IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
LPIIKFLCFL VKSLTRVSVS VSKSIIIIIL ICQKLHQRRH PRRFNEISSV SIHFTISQEL  60
ADASYRNAKL YTLKGTDVTP DLSSHNFVPD KHRNMYITDS YSSENYEKYF RDSPSEELIE  120
PSSSSISGNS VHPDSSYLLR ASSGASVIVN NPFDSRILST RHHNAYQSSF ESDFLENRSP  180
DGLDFDGEMR LKLQELEKAL FSDEEEEEED IFETAQIMDI DPDMAEWANP LQGMLLHDSP  240
KESSSSDSSN ISSISSTTKE TSQNSPQTPK QLLYECARAL SEGNEEQAKS MINNLRQMVS  300
IQGEPSQRIA AYMVEGLAAR VASSGKCIYQ ALRCKEPPSS DRLAAMQILF EVCPCFKFGF  360
IAANGAIVEA VRDEKKVHII DFDISQGTQY ITLIQALASM PGRRPHVRLT GVDDPETVQR  420
SVGGMNIIGK RLEKLAEELG LSFEFRAVAS KTSIVSPSML NCRPGEALVV NFAFQLHHMR  480
DETVSTVNER DQLLRMVKCL NPKLVTIVEQ DMNTNTSPFL QRFVEAYNYY SAVFDTLDAT  540
LPRESQDRMN VERQCLAKDI VNIVACEGED RIERYEVAGK WRARLTMAGF TPCPMSTNVR  600
EAIRKLIITQ YCDRFKIKEE KGALHFGYPV KVTLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6227562825367Protein SCARECROW
5b3h_A2e-6227562824366Protein SCARECROW
5b3h_D2e-6227562824366Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g13950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430843.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_017430844.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0L9V0V70.0A0A0L9V0V7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RNJ30.0A0A0S3RNJ3_PHAAN; Uncharacterized protein
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]