PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 240aa MW: 26285.2 Da PI: 5.7997

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g11170.4	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.4	8.3e-19	44	94	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Vang01g11170.4 44 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 94 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.4E-13	44	94	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.42	45	102	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-21	45	103	IPR016177	DNA-binding domain
SMART	SM00380	1.8E-36	45	108	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-32	45	103	IPR001471	AP2/ERF domain
CDD	cd00018	6.18E-31	46	104	No hit	No description
PRINTS	PR00367	2.4E-10	46	57	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-10	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRVSARNDNS GKESRSTSPL SPSEEAPPSE SKPEKRNRDS NKHPVYRGVR MRNWGKWVSE 60 IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN FPELAASLPR PVSLAPRDVQ 120 AAAAKAAHTD FRPSSTSLSS STSSLVSTTS SSSSLSSSVS TADLSAESEE LSQIIELPRL 180 ETSYELGKEF VFADSQDTWM YQPPIPWLQT TYDASQADDD IVVAETGLVN SFKSFLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-19	43	103	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g11170.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429559.1	1e-172	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	3e-70	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0L9V0T9	1e-171	A0A0L9V0T9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RMX5	1e-171	A0A0S3RMX5_PHAAN; Uncharacterized protein
STRING	XP_007161494.1	1e-128	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	7e-69	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]