PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 169aa MW: 18745.1 Da PI: 4.5752

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g11170.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.5e-15	2	44	10	55
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Vang01g11170.3 2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44 57********843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.112	1	52	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-28	1	58	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.9E-27	1	53	IPR001471	AP2/ERF domain
CDD	cd00018	4.11E-27	1	54	No hit	No description
Pfam	PF00847	1.2E-9	2	44	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-18	2	53	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN FPELAASLPR 60 PVSLAPRDVQ AAAAKAAHTD FRPLSSSVST ADLSAESEEL SQIIELPRLE TSYELGKEFV 120 FADSQDTWMY QPPIPWLQTT YDASQADDDI VVAETGLVNS FKSFLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-14	2	53	21	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g11170.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-143	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429559.1	1e-104	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	1e-56	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0L9V0T9	1e-103	A0A0L9V0T9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RMX5	1e-103	A0A0S3RMX5_PHAAN; Uncharacterized protein
STRING	XP_007161494.1	2e-98	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	5e-59	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]