PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g10960.1 | ||||||||
Common Name | LR48_Vigan07g119900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27771.1 Da PI: 5.9111 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 202 | 227 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 r +W+++Ed++l dav+++G g+W+t Vang01g10960.1 202 REPWSEQEDLQLRDAVQRWGEGNWAT 227 789*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.679 | 197 | 247 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 197 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-6 | 199 | 243 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 202 | 227 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.34E-8 | 204 | 244 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
LQLPFDPMAK EVNKQRRVKV PFSAEDTASL LQRYDAPTVL TLLQELANYP YSKFNWNDLA 60 AKTSTGISNA REYQMLWRHL AYGHSMANLD DDAQPLDDDS DLESEREPLP RLNRETATEA 120 AAFVKVIMAS FKLGESSATS SVIQAPLTIN TPSTIDKNES SSNTDIIFPV TVKRQTLPNT 180 SSTRVVEGNG SVRSSTSIKK KREPWSEQED LQLRDAVQRW GEGNWATMIK KDDFPIKRST 240 SQLSKVF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g10960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429787.1 | 1e-174 | PREDICTED: uncharacterized protein LOC108337722 isoform X1 | ||||
TrEMBL | A0A0L9UXD0 | 1e-176 | A0A0L9UXD0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141273.1 | 1e-135 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-47 | MYB_related family protein |
Publications ? help Back to Top | |||
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