PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 362aa MW: 39546.2 Da PI: 6.6941

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g09310.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.1	4.4e-17	251	284	1	32
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C++Cgt++ Tp++Rrgp+g+++LCnaCGl+++ Vang01g09310.1 251 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWAN 284 ********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	15.234	72	107	IPR010399	Tify domain
SMART	SM00979	1.8E-13	72	107	IPR010399	Tify domain
Pfam	PF06200	7.4E-14	73	106	IPR010399	Tify domain
PROSITE profile	PS51017	12.302	183	225	IPR010402	CCT domain
Pfam	PF06203	4.2E-15	183	225	IPR010402	CCT domain
PROSITE profile	PS50114	9.156	245	281	IPR000679	Zinc finger, GATA-type
SMART	SM00401	6.2E-12	245	312	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.33E-10	245	287	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.6E-14	249	285	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.64E-13	250	285	No hit	No description
Pfam	PF00320	9.2E-15	251	284	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	251	278	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEPPAMYGHS QPLNMPPQIS AAESNGSGPE PALDAHHHIH YETHALENGA AGAMVVVEDV 60 TSDAVYVSGG GGPEESSQLT LSFRGQVYVF DAVTPDKVQA VLLLLGGCEL SSSGSPCVDA 120 VPQQNQRVFS DNRRILYIIH TRLHLYRFTI DLLVTSPDAE YFVPPDIDKG SMEYPARCSL 180 PQRAASLDRF RKKRKERCFD KKVRYGVRQE VALRMHRNKG QFTSSKKQDG ANSYGTDQDS 240 GQDDSQSETS CTHCGTSSKS TPMMRRGPSG PRSLCNACGL FWANRVVVGV PPFDDVIVQG 300 ALRDLSKRNH EQSLVPVDDG NVSDCRTAAN PAHNNLAAYS EHDNPALVAD RKVFQSQKML 360 E*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEPPAMYGHS QPLNMPPQIS AAESNGSGPE PALDAHHHIH YETHALENGA AGAMVVVEDV  60
TSDAVYVSGG GGPEESSQLT LSFRGQVYVF DAVTPDKVQA VLLLLGGCEL SSSGSPCVDA  120
VPQQNQRVFS DNRRILYIIH TRLHLYRFTI DLLVTSPDAE YFVPPDIDKG SMEYPARCSL  180
PQRAASLDRF RKKRKERCFD KKVRYGVRQE VALRMHRNKG QFTSSKKQDG ANSYGTDQDS  240
GQDDSQSETS CTHCGTSSKS TPMMRRGPSG PRSLCNACGL FWANRVVVGV PPFDDVIVQG  300
ALRDLSKRNH EQSLVPVDDG NVSDCRTAAN PAHNNLAAYS EHDNPALVAD RKVFQSQKML  360
E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	RKKRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g09310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-162	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429060.1	0.0	PREDICTED: GATA transcription factor 25
Swissprot	Q9LRH6	8e-82	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A4D6MH37	0.0	A0A4D6MH37_VIGUN; Pseudo-response regulator 1
STRING	XP_007141281.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	4e-72	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]