PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08860.1
Common NameLR48_Vigan07g115500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 694aa    MW: 75324.8 Da    PI: 6.367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07292312526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  Vang01g08860.1 292 PCPEFRK-GSCSKGDACEYAHG 312
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.207.1E-1873197IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.77E-1677173IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-791160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.4193123IPR002110Ankyrin repeat
PROSITE profilePS5029720.39493202IPR020683Ankyrin repeat-containing domain
CDDcd002041.58E-1395171No hitNo description
PROSITE profilePS5008812.502128163IPR002110Ankyrin repeat
SMARTSM002484.8E-4128160IPR002110Ankyrin repeat
SMARTSM003568.6E-5287313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094292314IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5292312IPR000571Zinc finger, CCCH-type
SMARTSM0035616322345IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.991322346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
LPSLFCVFLS PEGNILHNSM CCVSKGKPSQ MGLLMEDECA KEEMHHRISA LLEFSAADDL  60
IGFKDAVEKE AQDVDGVGLW YGRRAGSKKI SYEERTPLMV AATFGSLDVS AYILGTGGVD  120
VNRASRSDGA TALHCAVAGG SAASVEVVKL LLDASADVSA VDADGNRPID LIVSVANSVF  180
SPRARVLQAL LEGTCDAAAD QTYFSLPQVI DQIEEQRQEM TTSRVSKDYP IDLSLPDIKN  240
GIYGTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGS  300
CSKGDACEYA HGIFECWLHP AQYRTRLCKD ESGCTRRVCF FAHKPEELRP LYASTGSAIP  360
SPRSYSAGAS ALEMGSISPI ALCSPSVLIP TSSTPPLTPS GASSPITGSI WSQSNASIPT  420
LLLPKSRLKT ASTARDIDLD FELLGLEAHR RRQQLMMDDM SGLSSPNWKN SMPNSPSFRV  480
SMSDHIGELN RLSGVKPSNL DDSFGSLEQS ILSKFHGISL DVAGPQLQSP TGIQMRSNMN  540
QQLGGYSSGL STSNMVGSRS FRVDPSAEGA SVALNPRAAA FAKRSHSFIE RSMVNHHSEV  600
PSPKVSTFTN WGSPDGKLDW TINGDELNKL RKSASFGFRS INSPLTKDST KMPANVDDEP  660
DVSWVNSLVK DAPPESGVED QRKQCHNGTE AIPA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431011.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0L9UXM30.0A0A0L9UXM3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RLQ20.0A0A0S3RLQ2_PHAAN; Uncharacterized protein
STRINGXP_007142205.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-179C3H family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]