PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g07650.1 | ||||||||
Common Name | LR48_Vigan07g085100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 728aa MW: 80763.3 Da PI: 7.8631 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.2e-19 | 318 | 418 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk++ae++ +++ e+ l ++d +g++W++++++ +++s++yvl+ G +a +L++gD+v+F++++ +++ Vang01g07650.1 318 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLHMKDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQALQLNAGDIVIFSRID-PGGK 410 99**************************555556677***************9989999999***9.********************987.7777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v++++r+ Vang01g07650.1 411 FVLGFRRA 418 79999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-20 | 315 | 417 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-30 | 315 | 422 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.06E-24 | 316 | 417 | No hit | No description |
Pfam | PF02362 | 4.2E-16 | 318 | 418 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-23 | 318 | 419 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 318 | 419 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MELDVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC 60 NFCNKSIHCG CIISRFSFEY LDFGGIGCST CLRASPFPLI QETGNSIRSI RSVKNHASDR 120 HTEHIDDRLF LDGSSKRKPM HMRRIVDGRE SSRWPQVKRD DIHSCIDLSR EEMRFSNVMK 180 PSNHSLKFTA LENNRPTWEN RSMHRSSSLN ISLGASSGNP VLPSASAVAA EGRFDGKTSS 240 SSFHQGQRSL SIMPKPLMNA ININMESSNG MISQERVARP PTDGKGKNML LSRYWPRITD 300 QELQQLSGDL KSTIVPLFEK VLSASDAGRI GRLVLPKSCA EAYFPPISQS EGLPLHMKDV 360 KGNEWTFQFR FWPNNNSRMY VLEGVTPCIQ ALQLNAGDIV IFSRIDPGGK FVLGFRRASD 420 STDTQVVTLF SISLSVDASA AHSNVLSTKE TTFSGATAGN SYHDLLQTRK GNGDPYLNKC 480 SEHFRLGTAG IAERLRTENS EIVNKDLVQL PISVSEKTQN IGPMCKRLLI HNEDAMELRV 540 TWEEAQDLLC PAPSIKSNIV TVEDQEFEEY EEPPVFGKRT TINARSSGSL SFASEEMSPK 600 ELDNIPVIRK GVLEDDVADR GDSSAGATTK YPRHRSGCTC IVCIQASSGK GRHSPPCITV 660 ERRLDTLLTR KKQRLGTQKD EDEGDGACLS EKEGNINKGC LKKGELSAGQ IDLNCRPNLD 720 EDMQVDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-66 | 296 | 425 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g07650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428427.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700-like | ||||
Refseq | XP_017428428.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700-like | ||||
TrEMBL | A0A0L9UX49 | 0.0 | A0A0L9UX49_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142042.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15634 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-156 | HSI2-like 1 |
Publications ? help Back to Top | |||
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