PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06940.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 255aa    MW: 28569.6 Da    PI: 5.1371
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06940.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74.1e-081872182455
                     S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     ++s+++++ LA+++gL+ +q+ +WF N+R ++
  Vang01g06940.2 187 NLSESQKQALAESTGLDLKQINNWFINQRKRH 218
                     799**************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1567111IPR005540KNOX1
PfamPF037904.8E-1969110IPR005540KNOX1
SMARTSM012561.5E-25120171IPR005541KNOX2
PfamPF037911.1E-20123169IPR005541KNOX2
SMARTSM003890.0022160225IPR001356Homeobox domain
SuperFamilySSF466891.07E-10187232IPR009057Homeodomain-like
CDDcd000861.94E-9187222No hitNo description
Gene3DG3DSA:1.10.10.606.8E-16188224IPR009057Homeodomain-like
PfamPF059206.0E-10189217IPR008422Homeobox KN domain
PROSITE profilePS500719.863189221IPR001356Homeobox domain
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MIGFGGNSCS ELSEMDMMNM ETNRKFLSLP LSNNSGAQMR TDRRVPVATN SIAQDHHYTH  60
HNPTDTCSVR DKIMAHPLFP RLLSSYLNCL KVGAPPEVVA SLEESCAKCE SINASSGRTG  120
SGSIGEDPAL DQFMEAYCEM LIKYEQELTK PFKETMLFFS RIECQLKALA VSSDFGDYLN  180
SLSVPTNLSE SQKQALAEST GLDLKQINNW FINQRKRHWK PSEDMQFAVM DATNYYMENV  240
MCKPFPMDGM PMLL*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g06940.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-165AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628170.11e-152homeobox protein knotted-1-like LET6
SwissprotP466087e-44HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1S3U9I71e-146A0A1S3U9I7_VIGRR; homeobox protein SBH1 isoform X1
STRINGGLYMA02G43761.11e-143(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.12e-41KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]