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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g06940.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 255aa MW: 28569.6 Da PI: 5.1371 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 4.1e-08 | 187 | 218 | 24 | 55 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRake 55 ++s+++++ LA+++gL+ +q+ +WF N+R ++ Vang01g06940.2 187 NLSESQKQALAESTGLDLKQINNWFINQRKRH 218 799**************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.5E-15 | 67 | 111 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.8E-19 | 69 | 110 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.5E-25 | 120 | 171 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-20 | 123 | 169 | IPR005541 | KNOX2 |
SMART | SM00389 | 0.0022 | 160 | 225 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-10 | 187 | 232 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.94E-9 | 187 | 222 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-16 | 188 | 224 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.0E-10 | 189 | 217 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 9.863 | 189 | 221 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 196 | 219 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MIGFGGNSCS ELSEMDMMNM ETNRKFLSLP LSNNSGAQMR TDRRVPVATN SIAQDHHYTH 60 HNPTDTCSVR DKIMAHPLFP RLLSSYLNCL KVGAPPEVVA SLEESCAKCE SINASSGRTG 120 SGSIGEDPAL DQFMEAYCEM LIKYEQELTK PFKETMLFFS RIECQLKALA VSSDFGDYLN 180 SLSVPTNLSE SQKQALAEST GLDLKQINNW FINQRKRHWK PSEDMQFAVM DATNYYMENV 240 MCKPFPMDGM PMLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g06940.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-165 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628170.1 | 1e-152 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | P46608 | 7e-44 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A1S3U9I7 | 1e-146 | A0A1S3U9I7_VIGRR; homeobox protein SBH1 isoform X1 | ||||
STRING | GLYMA02G43761.1 | 1e-143 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 2e-41 | KNOTTED-like from Arabidopsis thaliana 2 |
Publications ? help Back to Top | |||
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