PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06940.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 302aa    MW: 34001.8 Da    PI: 6.1616
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.2e-082342652455
                     S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     ++s+++++ LA+++gL+ +q+ +WF N+R ++
  Vang01g06940.1 234 NLSESQKQALAESTGLDLKQINNWFINQRKRH 265
                     799**************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-15114158IPR005540KNOX1
PfamPF037906.2E-19116157IPR005540KNOX1
SMARTSM012561.5E-25167218IPR005541KNOX2
PfamPF037911.4E-20170216IPR005541KNOX2
SMARTSM003890.0022207272IPR001356Homeobox domain
SuperFamilySSF466891.41E-10234279IPR009057Homeodomain-like
CDDcd000864.52E-9234269No hitNo description
Gene3DG3DSA:1.10.10.609.1E-16235271IPR009057Homeodomain-like
PROSITE profilePS500719.863236268IPR001356Homeobox domain
PfamPF059207.5E-10236264IPR008422Homeobox KN domain
PROSITE patternPS000270243266IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
LTIHKVDYTF PRLRFFSFIS GSTLWTIICS ALFEKTVRWG LGTTDPSQRG FGGNSCSELS  60
EMDMMNMETN RKFLSLPLSN NSGAQMRTDR RVPVATNSIA QDHHYTHHNP TDTCSVRDKI  120
MAHPLFPRLL SSYLNCLKVG APPEVVASLE ESCAKCESIN ASSGRTGSGS IGEDPALDQF  180
MEAYCEMLIK YEQELTKPFK ETMLFFSRIE CQLKALAVSS DFGDYLNSLS VPTNLSESQK  240
QALAESTGLD LKQINNWFIN QRKRHWKPSE DMQFAVMDAT NYYMENVMCK PFPMDGMPML  300
L*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g06940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-165AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628170.11e-149homeobox protein knotted-1-like LET6
SwissprotP466083e-43HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1S3U9I71e-142A0A1S3U9I7_VIGRR; homeobox protein SBH1 isoform X1
STRINGGLYMA02G43761.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.11e-40KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]