PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 318aa MW: 34723.7 Da PI: 6.582

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g05410.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Vang01g05410.1 166 FSCNYCKRKFFSSQALGGHQNAH 188 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.64E-6	164	193	No hit	No description
PROSITE profile	PS50157	11.323	166	193	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	188	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSPISKQFLD DSESLNKGNG MWILPSNFVS SHQCLPRFAS TKICLSSQAS RVIFLSKLYI 60 MKPNFDLEVE AHAEYESEVS SQVASNVSIQ ETSIGPCSDS LTNISHTTNP IGSHPNSDAI 120 SLDLTLNFKN SEPGGRDSIG FSFSSTSESS NEPASQTTAA TISRVFSCNY CKRKFFSSQA 180 LGGHQNAHKR ERTLAKRALR MGFFSERYAN LASLPLHGSF RSLGVKAHSS LHHGFSPTMR 240 TPEIKSNARF DQGYVGIPIF LEDDESDLLW PGSFRQVVEA GDSHQNFILT GSSDLSFTGV 300 NPPVEIENST PDLTLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g05410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428255.1	0.0	PREDICTED: zinc finger protein 4
Refseq	XP_017428256.1	0.0	PREDICTED: zinc finger protein 4
Swissprot	Q39263	6e-51	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0L9UX13	0.0	A0A0L9UX13_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RL42	0.0	A0A0S3RL42_PHAAN; Uncharacterized protein
STRING	GLYMA14G39280.4	1e-167	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-52	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]