PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g04530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 349aa MW: 40006.7 Da PI: 8.9676 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.2e-13 | 176 | 220 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Vang01g04530.1 176 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 220 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.624 | 72 | 126 | IPR017884 | SANT domain |
SMART | SM00717 | 5.6E-9 | 73 | 125 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.66E-11 | 75 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 76 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.34E-7 | 76 | 122 | No hit | No description |
PROSITE profile | PS51294 | 19.353 | 169 | 225 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.11E-16 | 171 | 225 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-17 | 172 | 224 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.6E-11 | 173 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 173 | 219 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 176 | 220 | No hit | No description |
Pfam | PF00249 | 7.1E-11 | 176 | 220 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
LVGVRGSTLF LVSSTRQQHL CCFSFRIRQT LTPKFWYSMI FPRFCTNLKG MELETLYPPC 60 FMPDSNWFVE ESQSTEWSRE DNKKFESALA IYDKDTPDRW FKVAAMIPGK TVLDVIKQYR 120 ELEEDVIEIE AGRVPIPGYL ASSFTFELVH NHNYDGCRRR PAAVRGSDQE RKKGVPWTEE 180 EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSGGK DKRRPSIHDI 240 TTVNLTETAA SDKIKSPFMI TPQQKLNSMS KVQLDWTSHC NDGSLMVFNP NRDNLFVSSS 300 SDIMALKMQG QDLYDCALHE AYAKVKVPGF GMAPRDFNNE AIFGIHAL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-16 | 77 | 139 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g04530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428068.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 3e-88 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0S3RKJ9 | 0.0 | A0A0S3RKJ9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141798.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 8e-93 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|