PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g02960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 415aa MW: 45073.9 Da PI: 5.279 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 9e-31 | 179 | 237 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt++ gCpv+k+v+r+aed +v+++tYeg+Hnh+ Vang01g02960.1 179 ADGCQWRKYGQKMAKGNPCPRAYYRCTMStGCPVRKQVQRCAEDRSVLITTYEGQHNHP 237 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.3E-34 | 163 | 239 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-28 | 171 | 239 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.079 | 173 | 239 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 178 | 238 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 180 | 237 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MDALDFFPHK SKETQDDDDE DDDNDNDIHH HQTLDFHVDT SLDLLTKNTG GNRPVEENDA 60 LETMDEKRKN GVDGEKEEMV PRSFLDIGVA EKDEASQQPS EEKLRESKSV VDLMHRCKGN 120 EKDVEDKLDC GRESSKARME GDQELSNKVP KLDQNSETLS MIKKARVSVR ARSDSTMIAD 180 GCQWRKYGQK MAKGNPCPRA YYRCTMSTGC PVRKQVQRCA EDRSVLITTY EGQHNHPLPP 240 TAQAMASTTS AAASMLLSGS MPSSDGLINP TILENASLPC SQNMATLSAS APFPTITLDL 300 TQNPTNSSHH QRDPHNQLSL LSPLLAQKFM SVPKLFGHSL CDQTKLAGLH ESQGMDAAAP 360 SFSNSLNAAT AAITADPNFT AALVAAITSV MGSSHSNTSG TSNTTGDHHC NNNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 165 | 240 | 1 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g02960.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428480.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 7e-91 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0S3RJD0 | 0.0 | A0A0S3RJD0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142321.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13913 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 5e-82 | WRKY family protein |