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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang01g02950.3 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
Family |
C2H2 |
Protein Properties |
Length: 443aa MW: 50615.9 Da PI: 9.0373 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang01g02950.3 | genome | SNU | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 78 | 97 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS
zf-C2H2 2 kCpdCgksFsrksnLkrHir 21
+C+ Cg +F+ + +L +H++
Vang01g02950.3 78 TCEECGVTFKKHAYLLQHMQ 97
6******************7 PP
|
2 | zf-C2H2 | 18.1 | 7.6e-06 | 160 | 184 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ dC+ s++rk++L+rH+ +H
Vang01g02950.3 160 FVCTvdDCHASYRRKDHLTRHLLLH 184
89********************998 PP
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3 | zf-C2H2 | 13.3 | 0.00025 | 189 | 214 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kCp +C+ Fs + n++rH H
Vang01g02950.3 189 FKCPvvNCNIEFSLQGNMQRHVEEiH 214
89*******************98777 PP
|
4 | zf-C2H2 | 17.5 | 1.1e-05 | 229 | 253 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++Cp Cgk F+ s+Lk+H +H
Vang01g02950.3 229 HVCPeiGCGKGFRFASQLKKHEDSH 253
79*******************9888 PP
|
5 | zf-C2H2 | 13.9 | 0.00016 | 347 | 372 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++C+ C+ +Fs ksnL +H + H
Vang01g02950.3 347 FQCEfkGCSCTFSKKSNLDKHKKAvH 372
89*******************99877 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00355 | 28 | 33 | 56 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 26 | 77 | 97 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-9 | 157 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.98E-6 | 158 | 186 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 160 | 189 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 160 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 187 | 215 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.42E-5 | 187 | 215 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 189 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0054 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-6 | 223 | 253 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.034 | 229 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 229 | 253 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 231 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.92 | 288 | 313 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 289 | 313 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 290 | 313 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 35 | 316 | 337 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-7 | 328 | 369 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.52E-9 | 331 | 386 | No hit | No description |
PROSITE profile | PS50157 | 13.609 | 347 | 377 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 347 | 372 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 349 | 372 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 371 | 401 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.7 | 378 | 404 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 380 | 404 | IPR007087 | Zinc finger, C2H2 |
Sequence ? help Back to Top |
Protein Sequence Length: 443 aa
Download sequence Send
to blast |
LHSSICSLYL ITKTMVEAVT IEERPKSRDI RRYFCQYCGI CRSKKTLITS HINSQHKEED 60 EKARKETDPE TESSKSNTCE ECGVTFKKHA YLLQHMQNSK IIGKLWINSV KHWIPDNELQ 120 NARGNEFRLD GSVSGRETSC EAPSRMPQSR SLNLRLARPF VCTVDDCHAS YRRKDHLTRH 180 LLLHEGKTFK CPVVNCNIEF SLQGNMQRHV EEIHDGSSTA AADKSHKQHV CPEIGCGKGF 240 RFASQLKKHE DSHGRLFFLG FIYELVNPVG YNFEESLYHA VKLESIEVVC LEPGCMKHFA 300 NVQGLRAHVN TSHQYMTCDI CGSKQLKKNI KRHLRSHEAD SSSSKTFQCE FKGCSCTFSK 360 KSNLDKHKKA VHLKEKPFRC GFPDCGMRFA YKHVRDNHEK TAKHVFTLVS SFSFWVILKK 420 LMQNSGQGRG EGGRENVLLL KC*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |