PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g00540.1
Common NameLR48_Vigan07g003600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 501aa    MW: 54607.5 Da    PI: 8.1342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g00540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.59.8e-27122178259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++++s+ ++++++ +  g+Hnh+
  Vang01g00540.1 122 KDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSN-NGNITDCVSIGQHNHP 178
                     7***************************************9.***************8 PP
2WRKY104.84.5e-33296354159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK vkg+ +prsYYrC+ +gCpvkk+ver+++d k+v++tYeg+H+he
  Vang01g00540.1 296 VNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHE 354
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-23115180IPR003657WRKY domain
PROSITE profilePS5081119.554116180IPR003657WRKY domain
SuperFamilySSF1182901.83E-22117180IPR003657WRKY domain
SMARTSM007741.2E-28121179IPR003657WRKY domain
PfamPF031064.4E-21122178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-35281356IPR003657WRKY domain
SuperFamilySSF1182901.44E-28288356IPR003657WRKY domain
PROSITE profilePS5081134.475291356IPR003657WRKY domain
SMARTSM007744.7E-38296355IPR003657WRKY domain
PfamPF031068.6E-26297353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
LIYKKQVHMV SSDKSEDQNT PSDKLQHRAS PDSDVTLSQG HDTKNDLSKP EGATSIPSAV  60
AKNEEGKDSG ATACALESDQ EGSTCSLPPE KHLQSPDTLL NELPPLQSSQ ESPSIIREKV  120
SKDGYNWRKY GQKHVKGNEF IRSYYKCTYP NCQAKKQLQQ SNNGNITDCV SIGQHNHPRP  180
QLNSTVSVEC VLPVVEQAAR KPLLANVKDK TSVEQGCTSQ QIKPLQSFPT AKVSPVNELK  240
AAHLQLSKAK NPIHDNEDPE SKRLKKDNSN VDATGITMST RESRVVVQTS SEVDLVNDGY  300
RWRKYGQKLV KGNANPRSYY RCSNPGCPVK KHVERASHDS KIVITTYEGQ HDHELPPGRT  360
VTHNAATNTH TTTMNGKAGT KSEDTAVNRG EQTGLGSASK LTEQLNGKST TKSKVGDIVE  420
FGVSSLSNEG PKIKLSEQQQ KDNSGTKDDS VSNDVICHSN SGVPCRSNEQ LKCEVKPLSE  480
GTKDCLNNKV AIHDTSSTES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-38283358176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g00540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430094.10.0PREDICTED: WRKY transcription factor 1-like
SwissprotQ9SI374e-80WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0L9UUR60.0A0A0L9UUR6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RIN90.0A0A0S3RIN9_PHAAN; Uncharacterized protein
STRINGXP_007142503.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-81zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]