PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0198s00010.1
Common NameLR48_Vigan05g147000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 584aa    MW: 64825.3 Da    PI: 5.6026
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0198s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.97.1e-1272105811373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+a+++++ +  ++l+ + ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    +e l++++l++e++P+lkf
  Vang0198s00010.1 210 LKQLLIACAKALHENNIKDFDQLVGKARDAVSINGEPIQRLGAYMVEGLVARKEASGKSIYHALRCREPE---GEELLSYMQLLFEICPYLKF 299
                       689******************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlva 183
                       ++++aN aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s      + l  +g+rL  + e++g+p+ef+  v 
  Vang0198s00010.1 300 GYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSRyarGGDGLDIVGKRLGLMSEKFGIPVEFHG-VP 391
                       *********************************************************99999999*************************.68 PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eakl 275
                          e+++ e+L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s+ ++ l
  Vang0198s00010.1 392 VFSEEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIdASLL 484
                       889*************************************************************************************66668 PP

              GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                       pres+eri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF++ pls+++++ +  ll+ ++ + y++ e++g+++lgWkdr+L+
  Vang0198s00010.1 485 PRESKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFTQSPLSSYVNSVIGILLKCYS-EHYTLLEKDGAMLLGWKDRNLI 576
                       ******************************************************************9888.66******************** PP

              GRAS 369 svSaW 373
                       s+SaW
  Vang0198s00010.1 577 SASAW 581
                       ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.809184563IPR005202Transcription factor GRAS
PfamPF035142.5E-124210581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDSQQLFSFG VASAGLPYVP SFPTVPSLPN RLLGSLKYDI GNSPNSPFST YFDSDTLSAL  60
SDGQEQYSPG EILSGVSSSC NSSLDTNQYM YKSISSVDFI DNFPLYSAWN SLPQNVNSNQ  120
KIQHALLELE TALMAPDDDQ VTTPNTLAGS SRPMASGHRY KPWRHENDGS QYAQPSYVPS  180
SRLSSEVVHV EKRQKLTEEP SLQAFPQNDL KQLLIACAKA LHENNIKDFD QLVGKARDAV  240
SINGEPIQRL GAYMVEGLVA RKEASGKSIY HALRCREPEG EELLSYMQLL FEICPYLKFG  300
YMAANGAIAE ACRNEDRIHI IDFQIAQGSQ WMTLLQALAA RPGGAPHVRI TGIDDPVSRY  360
ARGGDGLDIV GKRLGLMSEK FGIPVEFHGV PVFSEEVTRE MLDIRPGEAL AVNFPLQLHH  420
TADESVHVSN PRDGLLRLVK SLSPKVTTLV EQESNTNTTP FFNRFIETLD YYLAIFESID  480
ASLLPRESKE RINVEQHCLA RDIVNIIACE GKERVERHEL LGKWKSRLTM AGFTQSPLSS  540
YVNSVIGILL KCYSEHYTLL EKDGAMLLGW KDRNLISASA WHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5921758126378Protein SCARECROW
5b3h_A2e-5921758125377Protein SCARECROW
5b3h_D2e-5921758125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0198s00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425353.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0L9ULT00.0A0A0L9ULT0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SI030.0A0A0S3SI03_PHAAN; Uncharacterized protein
STRINGXP_007149678.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-171scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]