PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0182s00740.1
Common NameLR48_Vigan05g211700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 646aa    MW: 72193.8 Da    PI: 7.6459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0182s00740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.61.6e-168471756
                      HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Vang0182s00740.1  8 RLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 47
                      79**********************************9877 PP
2START225.12.2e-701633844206
                       HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
             START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                       ++a++el+k+a+ +ep+W +s     e++n+de++++f+ +++      +s+ea+r++gvv+ +l++lv+++ld++ qW+e+++    ka+t+
  Vang0182s00740.1 163 NQALEELIKMATMGEPLWLRSFetgrEILNYDEYVKEFAVENSssgkpkRSIEASRDTGVVFVDLPRLVQSFLDVN-QWKEMFPclisKAATV 254
                       67999****************99***************9888899*******************************.**************** PP

                       EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
             START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                       +vi++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wve
  Vang0182s00740.1 255 DVICNGegpnrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVE 346
                       ************************************************************98.9***************************** PP

                       -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       h +++++ +h+l+r +v+sgla+ga++w  tlq qce+
  Vang0182s00740.1 347 HLECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCER 384
                       ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.046149IPR001356Homeobox domain
SMARTSM003893.3E-6453IPR001356Homeobox domain
SuperFamilySSF466893.18E-13754IPR009057Homeodomain-like
CDDcd000869.27E-13847No hitNo description
PfamPF000467.5E-14847IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-14857IPR009057Homeodomain-like
PROSITE patternPS0002702447IPR017970Homeobox, conserved site
PROSITE profilePS5084838.57151387IPR002913START domain
SuperFamilySSF559619.61E-32154384No hitNo description
CDDcd088752.47E-111156383No hitNo description
SMARTSM002343.3E-70160384IPR002913START domain
PfamPF018521.1E-55163384IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-4210379IPR023393START-like domain
SuperFamilySSF559611.37E-14406606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MNVMLFYRLF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKS  60
EIEKLKEKNK TLRETINKAC CPTCGVPTTS RDGAMPTEEQ QLRIENAKLK AEVEKLRAAL  120
GKYAPGSTSP SCSSGHDQEN RSSLDFYTGI FGIDNSRIMD IVNQALEELI KMATMGEPLW  180
LRSFETGREI LNYDEYVKEF AVENSSSGKP KRSIEASRDT GVVFVDLPRL VQSFLDVNQW  240
KEMFPCLISK AATVDVICNG EGPNRNGAVQ LMFAELQMLT PMVPTREVYF VRFCKQLSAE  300
QWAIVDVSID KVEDNIDASL VKCRKRPSGC IIEDKSNGHC KVIWVEHLEC QKSAVHSLYR  360
TIVNSGLAFG ARHWITTLQL QCERLVFFMA TNVPMKDSTG VATLAGRKSI LKLAQRMTWS  420
FCHAIGASSF HTWTKVTSKN GEDIRISSRK NLNDPGEPLG LILCAVCSVW LPVSQNVLFD  480
FLRDETRRSE WDIMSSGGTV LSIANLSKGQ DRGNAVTIQT IKLKENSVWI LQDSCTNPYE  540
SMVVYASVDI TGIQSVMTGC DSSNLAILPS GFSIIPDGLE SRPLVITSRQ EEKYTEGGSL  600
FTMAFQILTN ASPTAKLTVE AVDSVNTLVS CTLRNIRTCL QCEEG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0182s00740.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425661.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0L9UPL70.0A0A0L9UPL7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SFS90.0A0A0S3SFS9_PHAAN; Uncharacterized protein
STRINGXP_007150635.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]