PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 388aa MW: 44215.5 Da PI: 4.4318

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0182s00340.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.3	1.1e-14	156	240	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ +l+r++l+ W++vsk + + ++er+ +qC+++++ l+k+ykk+k+ ++ ++ +++yf++++ Vang0182s00340.1 156 WTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVaQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQES-DGGDCKWVYFKRMD 240 ***********************************455789********************9996.666669*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-4	114	124	IPR009057	Homeodomain-like
Pfam	PF13837	8.6E-21	155	242	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-4	181	225	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDGIEDDASY HPNPYRIISH QRGYGYQNSP YSLPVNTEYA HHHDEDEEQE QLEGDDEVDQ 60 SNSLQLPQKD GDEENGIDGV GDENDDEEEE VEDDKQIGYY AIKSEDDLEW PPKKQKLKSL 120 ISTYELASRV PAPSAAAPVP SAPKPSSGGR NSLTDWTEHE TFVLLDAWGD TFLQLGRKSL 180 RCEEWQQVSK MVAQVSKIER TDTQCRNRLD TLKKKYKKEK AKFQESDGGD CKWVYFKRMD 240 ELMSSPPQQV GISCGLDSGD YVFMNRGVYL NQANGLDELR DSPENVESTG EEGSDGLQLQ 300 AKKRKGRSSG EASSFRLLAD SIQKFSRIYE KIENNKRQQM MELEKMRMDF HKELETQKRQ 360 ILGNLQSEIS KLEQRNDENE DSAENGM*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDGIEDDASY HPNPYRIISH QRGYGYQNSP YSLPVNTEYA HHHDEDEEQE QLEGDDEVDQ  60
SNSLQLPQKD GDEENGIDGV GDENDDEEEE VEDDKQIGYY AIKSEDDLEW PPKKQKLKSL  120
ISTYELASRV PAPSAAAPVP SAPKPSSGGR NSLTDWTEHE TFVLLDAWGD TFLQLGRKSL  180
RCEEWQQVSK MVAQVSKIER TDTQCRNRLD TLKKKYKKEK AKFQESDGGD CKWVYFKRMD  240
ELMSSPPQQV GISCGLDSGD YVFMNRGVYL NQANGLDELR DSPENVESTG EEGSDGLQLQ  300
AKKRKGRSSG EASSFRLLAD SIQKFSRIYE KIENNKRQQM MELEKMRMDF HKELETQKRQ  360
ILGNLQSEIS KLEQRNDENE DSAENGM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0182s00340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424033.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A0L9UPU2	0.0	A0A0L9UPU2_PHAAN; Uncharacterized protein
STRING	XP_007150667.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-62	Trihelix family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]