 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang0176s00100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
C2H2 |
| Protein Properties |
Length: 297aa MW: 33852.8 Da PI: 9.8375 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0176s00100.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 10.8 | 0.0015 | 130 | 152 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C ++++++ +L H + H
Vang0176s00100.1 130 SCSVCFRVYPTSRLLSIHVSEvH 152
6*****************99877 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MTQKYGPHSE VSIQFKIESG KRIPCVIEVK SVKMAMEVEN NHNQQLGFPF WKPIRRKFGP 60
DSPFFAPGNL ERELLAKQVA LELTEEKEQL EKWMQEEEGR EIFCPIVGCG ARLTSMDDFE 120
NHYNARHTAS CSVCFRVYPT SRLLSIHVSE VHDSFFQAKV ARGYDMVFGY LLPSSYECLV 180
EKCGLKFKSY NRRHQHLVDK HKFPTSFEFF KKAKPSKKQR LKSQQKKAVP KEKDAGMMEV 240
ENATVDDLVS AVSKLSTSDS TPSNISFGRR SKGLSFVPRT VQRRDQSNPA ASGTKR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G14140.1 | 1e-99 | zinc ion binding;nucleic acid binding;zinc ion binding |
