PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0173s00120.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 458aa    MW: 50738.2 Da    PI: 7.8652
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0173s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.81e-40133209278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Vang0173s00120.1 133 CLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 209
                       **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-32130194IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.701130207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.09E-37131212IPR004333Transcription factor, SBP-box
PfamPF031103.5E-30133206IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MKCNHWSVKE ELSILLLLLS ATATIYKSFI FLYYFVMDWN LKAPSWDLVD VDKASIPNID  60
SMEEHNRFGV YRMEGEFSVD LKLGHVGNSG TESALSKFKD VAAGAGVSKV ASSPSGSSKR  120
ARAINSTTLT VSCLVDGCNS DLSNCRDYHR RHKVCELHSK SPEVTIGGLK QRFCQQCSRF  180
HSLEQFDERK RSCRKRLDGH NRRRRKPQPE PHTRPGSFLS NYQGKLCGCS CCSNTTLSEW  240
THVHICVDFM QIKYKSCEIQ DFSGTQLLPF SNPHVYPSTA MMSTPWSGGL VTSAADARLH  300
NQHHHQELFL GSSHKEGKQV AFLHGNHSNQ SLPFPSPSVC HTLLRSSPLS ESCGARSKMF  360
CESLTTTNSV HDTPCALSLL SSSQTHTPGN GLNQMVQAPS MSLMQPLGLS LQDNTNLESV  420
ERVLVPNGSD HCSSMYSLGS DGSHCNEAPQ LFPFQWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271332061184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188205RKRSCRKRLDGHNRRRRK
2188206RKRSCRKRLDGHNRRRRKP
3189206KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0173s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419905.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A0S3RG280.0A0A0S3RG28_PHAAN; Uncharacterized protein
STRINGXP_007137898.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-65SBP family protein