PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0172s00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 256aa MW: 29291.5 Da PI: 10.0488 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 5.1e-18 | 64 | 130 | 30 | 94 |
..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 30 keesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +ee+k+ ++e + W+++++y+++s++yvltkGW+++vk+++L +gD+v F++++++ +++++ Vang0172s00120.1 64 EEEEKEAMFEKPLTpsDCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFI 130 456678888886655588**************************************87766665565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 1.3E-14 | 65 | 130 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.14E-14 | 80 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.69E-13 | 82 | 123 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-17 | 82 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.25 | 82 | 136 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSINHYSPEA RLYWTDQQQA STWLGNSHTP RFNLNDNQEE VDEEDEEVME KATAAGAGGE 60 AAAEEEEKEA MFEKPLTPSD CWRFRYSYWN SSQSYVLTKG WSRYVKDKRL HAGDVVFFHR 120 HRTHPQRFFI NSSRRQANPP AHVTTTATPS FYSAHPYPAH QLPFPYQPQS LHAPPGGGSQ 180 GQNQTTPGGN SSGGRVLRLF GKSRAMSKPR GWRVVMGKEK RLQPEGRFRR YRLAARAYRN 240 DHHSKGDIWT WLPKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-17 | 69 | 130 | 11 | 112 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0172s00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-159 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417793.1 | 1e-108 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
TrEMBL | A0A0L9U8E1 | 1e-106 | A0A0L9U8E1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RZ76 | 1e-106 | A0A0S3RZ76_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162942.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 7e-26 | B3 family protein |