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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Vang0143s00190.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
Trihelix |
| Protein Properties |
Length: 340aa MW: 39640.3 Da PI: 10.5412 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0143s00190.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 32.2 | 2.7e-10 | 22 | 68 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
++ g++r++k+Ckek+en+ k+ k++ke+++++ + +t+++fdql+
Vang0143s00190.1 22 LAGLGYHRNAKKCKEKFENVYKYNKRTKENKSGK--SHGKTYKFFDQLQ 68
6678*************************99996..55667******98 PP
|
| 2 | trihelix | 104.2 | 9.8e-33 | 210 | 295 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi++r++++++++++ k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk+++++k+r e+s+tcpyf++l+a
Vang0143s00190.1 210 RWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRDNNKER-RENSKTCPYFHELDA 295
8*********************************************************************8.78889********85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MSFGGNRWPR QETLALLKIR KLAGLGYHRN AKKCKEKFEN VYKYNKRTKE NKSGKSHGKT 60
YKFFDQLQAL ENHQRLTRKV LLKQEEMQKK FLEAMDKRER ERVAQQDNWR IQEMARINRE 120
HEILVQERST AAAKDAAVIA LLQKMYGQQN TTQHVQVQPP EQQNQTTLQS QLPTPMPNNN 180
FEIKKLNNGH HSATSTSTVT TSPATSSSSR WPKAEVHALI RLRTSLDTKY QENGPKAPLW 240
EDISIAMQRL GYNRSAKRCK EKWENINKYF KKMRDNNKER RENSKTCPYF HELDAIYKER 300
SLSQNPFGVF QNMKPNEMMM MEPLMVMIGV VGQTSATMN*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
