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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang0134s00420.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 217aa MW: 25107.4 Da PI: 8.3703 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0134s00420.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.3 | 1.2e-18 | 55 | 109 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++t++qle Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k
Vang0134s00420.1 55 EKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 109
57788*************************************************9 PP
|
| 2 | HD-ZIP_I/II | 118.5 | 3.7e-38 | 55 | 146 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++ev +L++ l+
Vang0134s00420.1 55 EKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAMLS 146
69**************************************************************************************8876 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0010434 | Biological Process | bract formation |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MDWHYTTKPF LPHPDTLSFF YNYNNNPYPG VEMKQATLLE TGEGSIPAMY NGSKEKKKRL 60
TSNQLELLER SFQEEIKLDP ERKMKLSREL GLQPRQIAVW FQNRRTRWKT KQLEHLYDVL 120
KHQYDVISNE KQKLQEEVMK LKAMLSKEQG FGKQRLGGYP EISGVETVES TSEGLRGSNK 180
GKSNIDQVAD EGFCSFSVED YNTVSVPFSQ WPVVPY*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 103 | 111 | RRTRWKTKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
