PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0126s00110.1
Common NameLR48_Vigan01g118100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 398aa    MW: 44204.1 Da    PI: 6.5113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0126s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l  +++++G g+W++ +++ g+ R++k+c++rw +yl
  Vang0126s00110.1 14 KGPWTPEEDKKLMAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding513.3e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Vang0126s00110.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-KRTDNEIKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.306961IPR017930Myb domain
SuperFamilySSF466895.87E-3011108IPR009057Homeodomain-like
SMARTSM007177.7E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001678.39E-111661No hitNo description
PROSITE profilePS5129425.2962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2665116IPR009057Homeodomain-like
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
CDDcd001671.44E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDKKLMAYIE EFGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAQLPKRT DNEIKNYWNT HLKKRLTRMG  120
IDPTTHKPKT DALGGSGGCQ SKDAANLSHM AQWESARLEA EARLVRESRL QVQSNLGPGS  180
NTQPARLVLN KITTQQPSLP PCLDILKAWQ SSWSKPQPPT KESNPKMMHS MYAMMLSTED  240
TLESPTSTLC FPGTTPTMLP VSNNNNIGVL FNENNDMFPL PSTNMDGGLM KENTVLHLQD  300
DDIMAAVEAF RATTTMYDSN NNVVPPTLPN GVVLEGLNND EGLVYDSNDN LGAEEENMAM  360
MNGDGSLCNV NLEENNKHYW NNIFNLVNDP LSGPSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0126s00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416577.10.0PREDICTED: protein ODORANT1-like
TrEMBLA0A0L9TME40.0A0A0L9TME4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R1K90.0A0A0S3R1K9_PHAAN; Uncharacterized protein
STRINGXP_007158642.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-103myb domain protein 16
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]