PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 381aa MW: 42108.3 Da PI: 6.6317

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0126s00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.4e-16	66	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Vang0126s00020.1 66 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 111 899***************************.*********996 PP
2	Myb_DNA-binding	55.8	1.1e-17	118	161	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Vang0126s00020.1 118 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 161 678*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.17	61	112	IPR017930	Myb domain
SMART	SM00717	2.9E-14	65	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-16	66	111	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.36E-28	66	159	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-25	67	119	IPR009057	Homeodomain-like
CDD	cd00167	2.32E-13	69	110	No hit	No description
PROSITE profile	PS51294	26.929	113	167	IPR017930	Myb domain
SMART	SM00717	1.8E-14	117	165	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	118	160	IPR001005	SANT/Myb domain
CDD	cd00167	7.28E-12	120	160	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-20	120	166	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MREFLGRNFE EQPNSDGAEE GKGSDSSDDG GGEDSDKVNH NANNFNEENL NENSNSGSGH 60 SKLCARGHWR PAEDSKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA 120 FSEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRRLS 180 QSVYRRVEEN TTSSNVSRDT ATAGTEPPPP PYCLSLPNGG LANNNMPSFP YAAAPFHGVA 240 APPGGGGGVE YGLNGSPHMA ASKEAISTTK LAPPHIAMYP QQTPLDFFSG GRSNDMVGEY 300 FGQNHQQPSG FYSHYPQYLM LMQQHQNNHN FYGFSNSTAQ ILGSEASLSS VAEHRDQAMS 360 SDPPDAIPPP FIDFLGVGAT *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MREFLGRNFE EQPNSDGAEE GKGSDSSDDG GGEDSDKVNH NANNFNEENL NENSNSGSGH  60
SKLCARGHWR PAEDSKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA  120
FSEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRRLS  180
QSVYRRVEEN TTSSNVSRDT ATAGTEPPPP PYCLSLPNGG LANNNMPSFP YAAAPFHGVA  240
APPGGGGGVE YGLNGSPHMA ASKEAISTTK LAPPHIAMYP QQTPLDFFSG GRSNDMVGEY  300
FGQNHQQPSG FYSHYPQYLM LMQQHQNNHN FYGFSNSTAQ ILGSEASLSS VAEHRDQAMS  360
SDPPDAIPPP FIDFLGVGAT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-34	66	166	7	107	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	178	YRRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00222	DAP	Transfer from AT1G69560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0126s00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428973.1	0.0	PREDICTED: uncharacterized protein LOC108337044
TrEMBL	A0A0L9TM14	0.0	A0A0L9TM14_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R1P8	0.0	A0A0S3R1P8_PHAAN; Uncharacterized protein
STRING	XP_007158647.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-73	myb domain protein 105

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]