PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0121s00440.1 | ||||||||
Common Name | LR48_Vigan03g256800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8646.66 Da PI: 6.5156 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.6e-09 | 10 | 53 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT +++ +a ++G + +W+ Ia+++g ++ +++k ++ Vang0121s00440.1 10 SWTRLQNKQFEKALVLYGEDtpdRWHNIAKEVG-DKSVEEVKRHY 53 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.186 | 6 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-8 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-12 | 9 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-9 | 9 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-6 | 10 | 53 | No hit | No description |
Pfam | PF00249 | 4.5E-7 | 10 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MNNKEQRHSS WTRLQNKQFE KALVLYGEDT PDRWHNIAKE VGDKSVEEVK RHYAILLEDV 60 SRIESGHVPI PEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-21 | 11 | 73 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0121s00440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-121 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163428.1 | 2e-38 | hypothetical protein PHAVU_001G233900g | ||||
Swissprot | Q1A173 | 1e-27 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0L9U8Z8 | 2e-47 | A0A0L9U8Z8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163428.1 | 6e-38 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-30 | RAD-like 6 |
Publications ? help Back to Top | |||
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