PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0110s00170.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 145aa MW: 15825.2 Da PI: 9.1788 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 33 | 72 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i +++ L++l+ + +K + +++L++A+eYI L Vang0110s00170.3 33 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 72 789999************999.....9***************887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-10 | 22 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.655 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-12 | 24 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0029 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.64E-5 | 33 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence Send to blast |
MMEHKRSPCS VDQSSYTSIA SKRQKADLSI STKERKEKIG ERIVALQQLV SPYGKTDTSS 60 VLKEAMEYIG FLHKQVKLLS APYLETSAAA KMQGMEACSL RSRGLCLVPV SFTIGVAESN 120 GADIWAPIKT TTSPKLENDV SQFH* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0110s00170.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031098 | 0.0 | KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510438.1 | 1e-103 | transcription factor bHLH153 isoform X1 | ||||
Refseq | XP_017411985.1 | 1e-103 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_017411986.1 | 1e-103 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_017411988.1 | 1e-104 | PREDICTED: transcription factor bHLH113 isoform X3 | ||||
Refseq | XP_017411989.1 | 1e-104 | PREDICTED: transcription factor bHLH113 isoform X3 | ||||
Refseq | XP_022638699.1 | 1e-104 | transcription factor bHLH153 isoform X3 | ||||
Swissprot | Q7XJU2 | 7e-58 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0S3R2Y2 | 1e-102 | A0A0S3R2Y2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3UWH8 | 1e-102 | A0A1S3UWH8_VIGRR; transcription factor bHLH153 isoform X1 | ||||
TrEMBL | A0A3Q0F7X1 | 1e-102 | A0A3Q0F7X1_VIGRR; transcription factor bHLH153 isoform X3 | ||||
STRING | XP_007156560.1 | 3e-98 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-60 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|