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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0109s00390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 31637.1 Da PI: 7.1636 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 70.3 | 2.8e-22 | 21 | 60 | 2 | 41 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWt 41 +e+ +kcprCds ntkfCyynnysl+qPr+fCk+Crr t Vang0109s00390.1 21 PEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRLTT 60 67899********************************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.3E-18 | 23 | 60 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-15 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 17.923 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MPPTPKDHEL TEGRKTTRPP PEQGVKCPRC DSPNTKFCYY NNYSLTQPRH FCKTCRRLTT 60 FNTQHHLPTP PTGVFNQFSS FGDVPSSSTS SLSALSAFQL DPPAAVSNPL LGLVPPNPDL 120 WALRRSERAS LSDPLNSAMQ TLQTMEAMNV HSNLASSIES LSNINQDLHL KLQQQRMATM 180 MFGGDSQKGE SSAALNGFGN QKLLQPVSFQ NLAISKPENL PAGSSINGGP SGETVTAAST 240 EWFFGNSFPS VSPSTSNGGA NVNHISNDAN NNNSWTGSLA WGDLQQQPYT ALP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0109s00390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491952.1 | 1e-178 | dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A1S3TDV8 | 1e-177 | A0A1S3TDV8_VIGRR; dof zinc finger protein DOF5.7-like | ||||
STRING | XP_007156457.1 | 1e-150 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 2e-31 | Dof family protein |