PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0090s00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 269aa MW: 29555.4 Da PI: 9.8519 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.2e-39 | 33 | 92 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Vang0090s00020.1 33 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 92 7899******************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 29 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.4E-34 | 34 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDTAQWAQGI GVVKPMEGSK PPPMLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSTPSAPSPA SAPTKKLPDL TPPNFPQSAS 120 QDPKIHQGQD LNLAYPPAED YNTVSKFIEV PYTTELDKGS LQNATSSSTP SQLSAMELLK 180 TGIASSRGLN SFMPMYNSTG FPLPDFKPPP GLNFSLEGFE NGYGGLQGIQ EGPTGARILF 240 PVEDLKQQDL RARFSATTAR KRIPINTIV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0090s00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420557.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 | ||||
TrEMBL | A0A0S3REK8 | 0.0 | A0A0S3REK8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136465.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-53 | Dof family protein |