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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0082s00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 194aa MW: 21478.4 Da PI: 5.5902 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 157.7 | 9.8e-49 | 25 | 161 | 22 | 166 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110 + vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ shl+ + + ++ + ++ +++sas + s + +e++ +p Vang0082s00180.1 25 YNVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLSHLEPKESSPEQD-------A--NKTLNSHSASLMTYS---DCEEEDLIP 105 579****************************9988888889988854332222222.......2..222333333333333...345556667 PP YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 v++PPekrqr Psayn+fikeei+r+ka+nPd++h+eafs+aaknWa fP+ Vang0082s00180.1 106 MSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPT 161 66779*************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.6E-51 | 25 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.27E-9 | 108 | 161 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-6 | 111 | 161 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLECFPAMKT TLSTPFHKSL KYVTYNVSVP CSSLSMVVTV RCGHCTSLLS VNMMKASFVP 60 FHLLASLSHL EPKESSPEQD ANKTLNSHSA SLMTYSDCEE EDLIPMSNIV NKPPEKRQRT 120 PSAYNCFIKE EIKRLKAENP DMAHKEAFST AAKNWANFPP TQCKGDDQES CSQTDQLVDL 180 DSQVDPPDAE VKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0082s00180.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-68 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157432.1 | 1e-119 | hypothetical protein PHAVU_002G069700g | ||||
Swissprot | Q9LDT3 | 9e-50 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | V7CKI9 | 1e-118 | V7CKI9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157432.1 | 1e-119 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 4e-52 | YABBY family protein |
Publications ? help Back to Top | |||
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