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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0071ss01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 260aa MW: 28436.2 Da PI: 10.6333 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 36.3 | 1.4e-11 | 14 | 78 | 23 | 86 |
trihelix 23 rgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k+ + ++s++p+fd+l+ Vang0071ss01010.1 14 RGNLKQKHWKEVADIVsgreDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAG---ATSKWPFFDRLD 78 689*************854334444556679*****************99986...6779******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-17 | 12 | 80 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MNGEALSSSV LNCRGNLKQK HWKEVADIVS GREDYTKAPK TDIQCKNRID TVKKKYKSEK 60 AKIAAGATSK WPFFDRLDKL IGPSAKIPGA GASSGTAGTS AAGNSILQSH KVPLGIPVGV 120 RDGVNQYHRP QRPAQQQQPQ PVPLKNQKIQ FRRRGPPLES DSDERGASSP ASSDSFPPES 180 FERKRPRVMS SNAGKGSEGR RRAKGWGSAF IEVILISDRT LKFNTALTDY QTLSDTLVLV 240 FDVFPNFNFG FFGFFGYSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0071ss01010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441369.1 | 1e-118 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0L9VQ08 | 1e-117 | A0A0L9VQ08_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SZD6 | 1e-117 | A0A0S3SZD6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135401.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-30 | sequence-specific DNA binding transcription factors |