PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0071ss00910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 400aa MW: 45662.1 Da PI: 8.6295 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.7e-07 | 372 | 392 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++r G C +Gd+CkF H+ Vang0071ss00910.1 372 VCRHYSR-GRCYFGDKCKFLHD 392 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.291 | 367 | 394 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.2E-4 | 368 | 393 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 369 | 392 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-7 | 371 | 394 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-5 | 372 | 392 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
METKDSPMEL YEISTESDGS DSDSDWEDSG EDPDYDALEE SHSKFSNLSL KHKAKARFIE 60 EKGRGEEVLV VTASVNDGEN FGKVQKLIEG DACTGDVVLF EQNVYEMFNI ASRSASGPPC 120 GKRIVAGRIV KESYGAAKQQ HTFTIEVLWS KGEKPLPPLY PLLIKGRNLY RLKTLRQKWE 180 DEAERQKILM EKHSRGSLAR ADREERIQEK EKRKHTKENR VSKKEARNQR QSNSHITRPQ 240 YQPQGTNVVI NPENPEFPSR NSVLSVNMMK ERYCILNNSA ATFGGTSFAV HSMHRNHTSD 300 FRNTFDIGRV RGAETGANYY ADPHFRENLP RFVNCHPNMA EMGTHHRIPL ANANHSHPFM 360 APNRESFKIN QVCRHYSRGR CYFGDKCKFL HDLRDKGNA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0071ss00910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441704.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1 | ||||
Refseq | XP_017441705.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X2 | ||||
TrEMBL | A0A0S3SZ33 | 0.0 | A0A0S3SZ33_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA16G01296.2 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11652 | 22 | 24 |