PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0071ss00530.1
Common NameLR48_Vigan192s000900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 263aa    MW: 29757.6 Da    PI: 8.1578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0071ss00530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-181360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+ eEde l ++v+ +G g W ++a+  g++R++k+c+ rw++yl
  Vang0071ss00530.1 13 KGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYL 60
                       79********************************************97 PP
2Myb_DNA-binding47.54.3e-1566110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
  Vang0071ss00530.1  66 RGDISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 110
                        5667899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-23663IPR009057Homeodomain-like
PROSITE profilePS5129425.796864IPR017930Myb domain
SuperFamilySSF466891.54E-2911107IPR009057Homeodomain-like
SMARTSM007171.6E-151262IPR001005SANT/Myb domain
PfamPF002491.7E-161360IPR001005SANT/Myb domain
CDDcd001675.61E-111560No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2364115IPR009057Homeodomain-like
PROSITE profilePS5129420.32865115IPR017930Myb domain
SMARTSM007178.5E-1665113IPR001005SANT/Myb domain
PfamPF002493.8E-1466111IPR001005SANT/Myb domain
CDDcd001674.95E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRRPCCPKE INKGAWSREE DETLSKYVAI HGEGKWQKVA QNAGLKRCGK SCRQRWLNYL  60
KPGIKRGDIS VDEEDMIIRL HRLLGNRWAL IAKRLPGRTD NEIKNYWNTN LSKKLQKHGT  120
PSLSVSSPEH KRHEEEKIKQ VHVAPEAPRP RRVSAVEYSK IVENNRCSPS NKVEGSSDEA  180
SLSDFLIDID QSHLLIGDDS NSKVPQMEEE HNNKQVGLIN SPSSSSPSDH CHHLLAEKFD  240
PLETLLDVEL KRMASFLGLE ND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0071ss00530.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405912.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A0L9T6320.0A0A0L9T632_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SZK10.0A0A0S3SZK1_PHAAN; Uncharacterized protein
STRINGXP_007135451.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.17e-56myb domain protein 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]