PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0071ss00480.1 | ||||||||
Common Name | LR48_Vigan192s001500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 390aa MW: 42867.1 Da PI: 6.9944 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 274 | 322 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l Vang0071ss00480.1 274 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 322 7**************************99999*99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.948 | 267 | 326 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 269 | 325 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.06E-15 | 269 | 327 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-8 | 271 | 324 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.07E-19 | 273 | 323 | No hit | No description |
Pfam | PF00249 | 1.2E-5 | 274 | 322 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
METVVGIEDN DDGKFEDSGL DRSSSALSSP KQISNPIVYK LVRVEGDGRL VPATDDEVME 60 VGDFLEYENS EMHVVADTGQ SLECISIERS SSGKLRLECS EGSTEADLGK LNAKLQSRCG 120 GSEMYSQVLP ARNTFSEVRT CGTRFASLGG SDVEIPCVSW IRRSRPRKDM XSLMKFHPSA 180 MSETEKLSNK LIEHSSDAVG EIPDKVFKSR MPATFHQPSS SEPEKEKQCP VIATIEPRQE 240 LRPKRADPPG HTSDDNIVTV PTAKGGMRRK HHRAWTLVEV IKLVEGVSRC GAGRWSEIKR 300 LSFASYSYRT SVDLKDKWRN LLKASFAMTP APSDEGINSR KHGTAPIPEK ILLRVRELAE 360 MNSQVPPNIS SNKVAAGGGS VHEDRSGYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 167 | RRSRPRK |
2 | 161 | 168 | RRSRPRKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0071ss00480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ560707 | 0.0 | FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017405916.1 | 0.0 | PREDICTED: uncharacterized protein LOC108319327 isoform X1 | ||||
Refseq | XP_017405917.1 | 0.0 | PREDICTED: uncharacterized protein LOC108319327 isoform X2 | ||||
TrEMBL | A0A0L9T5F8 | 0.0 | A0A0L9T5F8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SZK5 | 0.0 | A0A0S3SZK5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135460.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7849 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-56 | TRF-like 6 |
Publications ? help Back to Top | |||
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