PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0070s00490.2

Common Name

LR48_Vigan06g114200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 485aa MW: 54328.5 Da PI: 7.1932

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0070s00490.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.9e-42	182	258	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q Vang0070s00490.2 182 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 258 6**************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-34	177	244	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.795	180	257	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.91E-40	181	262	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.6E-32	183	256	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
LIVLMESWSY VPEEKGYLFS DEMDFSLDAF MRSRRTLVEW DNKSNFERDG FNSDREAVKS 60 MEFVDLGFPD LLQKSFHGSQ PLETSSYELN SNSSRRGNSS TQVIALDSTM GEEESDSKHL 120 SSLVEAKTHD SSLIDLKLGR LADCKGASSD KVAKEGFTLT SINPTTLSKR ARTSSLSAQA 180 PVCQVYGCNM DLSSSKDYHK RHKVCDAHSK TAKVIVNGLE QRFCQQCSRF HLLAEFDDGK 240 RSCRRRLAGH NERRRKPQFD YMTGKQHKIL HSYQGTKYLG SSLQNKPQFP FQNIFQSGIL 300 FHGKHAQNSQ SGRIKLEEDS LYSSQLAAPV TLGQELSSCA LSLLSDQSQY PSRHAAGNPL 360 AGSRILHGIH IQDRDDLVSQ TSLRITSSAD KYAANESFPC NTASKDVIKN QTAPFSNAVH 420 ALQDHHGDDI CQPSDLFDIK HRLSSEHGAT VDLFQLSSHL QRVEQQRNSV LVKWENEDYC 480 FPTV*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

LIVLMESWSY VPEEKGYLFS DEMDFSLDAF MRSRRTLVEW DNKSNFERDG FNSDREAVKS  60
MEFVDLGFPD LLQKSFHGSQ PLETSSYELN SNSSRRGNSS TQVIALDSTM GEEESDSKHL  120
SSLVEAKTHD SSLIDLKLGR LADCKGASSD KVAKEGFTLT SINPTTLSKR ARTSSLSAQA  180
PVCQVYGCNM DLSSSKDYHK RHKVCDAHSK TAKVIVNGLE QRFCQQCSRF HLLAEFDDGK  240
RSCRRRLAGH NERRRKPQFD YMTGKQHKIL HSYQGTKYLG SSLQNKPQFP FQNIFQSGIL  300
FHGKHAQNSQ SGRIKLEEDS LYSSQLAAPV TLGQELSSCA LSLLSDQSQY PSRHAAGNPL  360
AGSRILHGIH IQDRDDLVSQ TSLRITSSAD KYAANESFPC NTASKDVIKN QTAPFSNAVH  420
ALQDHHGDDI CQPSDLFDIK HRLSSEHGAT VDLFQLSSHL QRVEQQRNSV LVKWENEDYC  480
FPTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	174	256	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0070s00490.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427905.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_017427906.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_017427907.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_017427908.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
TrEMBL	A0A0L9USY1	0.0	A0A0L9USY1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T224	0.0	A0A0S3T224_PHAAN; Uncharacterized protein
STRING	XP_007153485.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-65	SBP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]