PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 327aa MW: 35925.3 Da PI: 9.765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0070s00260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.1	4.8e-16	59	108	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Vang0070s00260.1 59 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 108 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-18	55	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-22	56	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	57	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.51E-15	59	112	No hit	No description
Pfam	PF00010	2.2E-13	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	63	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSVAGKISCH LNAAGERPSQ NLTRRRSLSQ FPIWVSLFPP KVVVVIADGK AIDKASAIRS 60 KHSVTEQRRR SKINERFQIL RDLIPHSDQK RDTASFLLEV IEYVQYLQEK VQKYEGSYPG 120 WGQEPSKLMP WRNSHWRVQS FAGQPSAVKN GLGTVSPFPG KFDESSVSIS PTMLSGTQNT 180 IDPDQSRDIV NKTAERQPDL VSKGIPLPLP MHSNMSVPVR SDGVLAHPLQ GTVSDAQSTE 240 CPTTSEPQNQ QDELTALQSA GLDLSQASIS VQINLGKRAN RGLSCGTSSP KNHDNPLSNN 300 QTIAHFRDAG SGEDSDQTQK RMKTYK*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0070s00260.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093538	0.0	BT093538.1 Soybean clone JCVI-FLGm-24O13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427812.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-89	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0S3T203	0.0	A0A0S3T203_PHAAN; Uncharacterized protein
STRING	XP_007153463.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	5e-92	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]