PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0069ss02100.1 | ||||||||
Common Name | LR48_Vigan406s024300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 208aa MW: 22280.6 Da PI: 8.4859 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.8 | 3.2e-40 | 17 | 77 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk+ k+s Vang0069ss02100.1 17 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSIKRS 77 57899***************************************************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 12 | 66 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-33 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.339 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MQDPTAFQGL KHPQFPEQEQ LKCPRCDSTN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKSIKRSSTS KRSSAPASSA VSEADPTRIC TNPVEQDSRA LNIGGTFSSL 120 LASSGHFGTL LDGLNPTGSG LKMGEFGQDV SSDLGLNSDS GSNPGLQLQS NGSSEGFLGM 180 QNGESTCWNG GHGWSDLAIY TPRPSFQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0069ss02100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407438.1 | 1e-152 | PREDICTED: dof zinc finger protein DOF3.1 | ||||
Refseq | XP_017407439.1 | 1e-152 | PREDICTED: dof zinc finger protein DOF3.1 | ||||
Swissprot | O82155 | 9e-43 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A0L9TA27 | 1e-151 | A0A0L9TA27_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T037 | 1e-151 | A0A0S3T037_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135581.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-35 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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