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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0069ss01810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 246aa MW: 28234.9 Da PI: 4.9292 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.3 | 7.3e-05 | 15 | 70 | 8 | 51 |
-HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51 ++++ eLe+ ++ ++ ++ + +e+A++ +L+ +qV WF+Nr Vang0069ss01810.1 15 SSDEMLELERIYKDmgEKPIDWKLCQEIARRFsslsntarktSLSWQQVEQWFKNR 70 677888999999966688889999999999999999999999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16719 | 1.3E-20 | 99 | 179 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDTSTLTEQP FLKLSSDEML ELERIYKDMG EKPIDWKLCQ EIARRFSSLS NTARKTSLSW 60 QQVEQWFKNR QRVSQNKDSS SPNLVPLSAG LSSSKDISDL TFEARSTKDV AWHDVALFLN 120 YRVMCSGELE VRVRYAGFSK EQDEWVNVKQ GVRERSIPLA PSECQKLQDG NLILCFLRRV 180 HDPTECTCTF IIRYLHDQTE EEVSWNRLCC RPTEEESAVY PILAIDPTQS PSPSFSLNPI 240 ESLWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_A | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 1e-40 | 98 | 214 | 2 | 135 | SHH1 SAWADEE |
4iur_B | 1e-40 | 98 | 214 | 2 | 135 | SHH1 SAWADEE |
4iut_A | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 1e-40 | 98 | 214 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0069ss01810.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 8e-74 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407436.1 | 1e-178 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 | ||||
TrEMBL | A0A0S3T0M8 | 1e-175 | A0A0S3T0M8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135638.1 | 1e-140 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2704 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 5e-37 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |