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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang0069ss01560.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
HD-ZIP |
Protein Properties |
Length: 629aa MW: 70139.4 Da PI: 6.8646 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang0069ss01560.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 51 | 2.5e-16 | 4 | 42 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
lF+++++p++++r++L+++lgL rqVk+WFqNrR++ k
Vang0069ss01560.1 4 LFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIK 42
8**********************************9877 PP
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2 | START | 181 | 6.9e-57 | 155 | 367 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79
+ ++a++el+k+a +ep+Wv+s+ e++n+de++++f+ +++ +ea+r+s vv+m+l+ l++++ld++ qW+e+++ ka
Vang0069ss01560.1 155 IVNRATEELIKMANMGEPLWVRSVetsrEILNYDEYVKEFAVKNSssdkpkTFIEASRDSEVVFMDLPHLLQTFLDVN-QWKEMFPclisKA 245
567999**********************************888779****99**************************.************* PP
EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
+t++vi++g ga+qlm+aelq+l+p+vp R+++fvR+++ql++++w+i dvS+d +++ ++s+ +++++pSg++ie+ksngh+k
Vang0069ss01560.1 246 ATVDVICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCCKQLSDEQWAIIDVSIDKVEHNI-DASLEKCRKRPSGCIIEDKSNGHCKS 336
****************************************************************8.9***********************96 PP
EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
t +h l+r +v+sgla+ga++w tlq qce+
Vang0069ss01560.1 337 T-----------IHTLYRTIVNSGLAFGARHWITTLQLQCER 367
5...........79**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 629 aa
Download sequence Send
to blast |
MLMLFKESPH PDEKQRQQLS QQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKTELDKL 60 KEENKAMREI IRKSCCPNCG MVTATIDASM SIEEKQLLIE NVKLKAEVEK LRATLGKCSP 120 TSPASSAGHD EEENRSSLDF YNGVFGLEKS RIMEIVNRAT EELIKMANMG EPLWVRSVET 180 SREILNYDEY VKEFAVKNSS SDKPKTFIEA SRDSEVVFMD LPHLLQTFLD VNQWKEMFPC 240 LISKAATVDV ICNGEGSNRN GAVQLMFAEL QMLTPMVPTR EVYFVRCCKQ LSDEQWAIID 300 VSIDKVEHNI DASLEKCRKR PSGCIIEDKS NGHCKSTIHT LYRTIVNSGL AFGARHWITT 360 LQLQCERLVF NMATNVPTKD STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTKFT 420 SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SVWLPVSPNA LFDFLRDEAR RSEWDMMSCG 480 GSVQSIANLA KGKGRGNAVN IHKIESTENS VWVLQDSCTS GYESMVAYAL VDFAGLQSVL 540 TGCDSSNLTI LPSGFSILPD GVEERPLVIR SKQDEKGTEG GSLFTMLLQM LVNASPTAKL 600 TMESVESATN LVSCTLRKIR TSLLCEDG*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT031164 | 0.0 | KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds. |