PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 197aa MW: 21294.2 Da PI: 10.7562

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0069ss00630.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.3e-20	71	121	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++l+g+ Vang0069ss00630.1 71 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 121 69*****.******32....25************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.24E-15	70	129	No hit	No description
PROSITE profile	PS51032	22.629	71	128	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-32	71	134	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	71	128	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-14	71	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-22	71	128	IPR016177	DNA-binding domain
PRINTS	PR00367	6.5E-11	72	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.5E-11	94	110	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNDEIYLHAP TTATATAANV LLPKPETVSS HETGLEGIAA VVGEHVLFGT SSTLHVPETP 60 KKTAGVSVNK SYRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEEAARA YDAAARRLRG 120 AKARTNFKIP SVLPLSPSSE GGVVKPKAAR NNARKCSSVE QLFSGVPQVR RNDGGGENLN 180 VDVNLKLDVR NSRMVI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	72	127	15	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0069ss00630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017407347.1	1e-143	PREDICTED: ethylene-responsive transcription factor ERF084-like
Swissprot	Q9M8M5	1e-30	ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBL	A0A0L9T9K5	1e-141	A0A0L9T9K5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T0V5	1e-141	A0A0S3T0V5_PHAAN; Uncharacterized protein
STRING	XP_007135791.1	9e-97	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13023	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80580.1	1e-28	ERF family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]