PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0065ss00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 590aa MW: 66477.9 Da PI: 5.0871 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.2 | 1e-19 | 207 | 256 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQ Vang0065ss00060.1 207 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMSVPWLTRENVASHLQ 256 68*******************.9***************************9 PP | |||||||
2 | Response_reg | 82 | 1.8e-27 | 27 | 135 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+vdD+p+ +++l+++l+k y ev+++ ++eal++l+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + + Vang0065ss00060.1 27 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGV 116 89*********************.***************888889**********************6644.8******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ ++el++ Vang0065ss00060.1 117 QHGACDYLLKPIRMKELRN 135 ****************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.6E-44 | 24 | 163 | No hit | No description |
SuperFamily | SSF52172 | 3.13E-35 | 24 | 152 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.0E-32 | 25 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.886 | 26 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-24 | 27 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.79E-30 | 28 | 141 | No hit | No description |
SuperFamily | SSF46689 | 4.66E-13 | 205 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 205 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-18 | 207 | 256 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 590 aa Download sequence Send to blast |
MTLLSKSMDN GCFSSPRHEA FPAGLRVLVV DDDPTWLRIL EKMLKKCLYE VTTCCLATEA 60 LKKLRERKDA YDIVISDVNM PDMDGFKLLE QVGLEMDLPV IMMSVDGETS RVMKGVQHGA 120 CDYLLKPIRM KELRNIWQHV FRKRMHEARD FESHEGFEAL HLLMNGSDQS DDGNIFAVEE 180 ITSIKKRKDA DSKHDDKEFG DHSPTKKARV VWSVDLHQKF VKAVNQIGFD KVGPKKILDL 240 MSVPWLTREN VASHLQGSLM RKKFILQKYR LYLSRLQKEN DQKSSSSGVK HSDSPSKDPG 300 SFSFLNTASN KQQSDVVIDS FSHSDESLLQ MDAPSHEGDL KRILSEPTTE KRRSSPKSSQ 360 MSLNQPFSSV ESSEASHAIF DCTIQTQYSW GEFPKGPLKE EQKTTVQLED SFSQLPLHGT 420 RHPIQVDQSQ SIASINSNPS ITEEEVAPSL DTKTLYAGYK SDYVSPVSSM GTVVDTFPKQ 480 SKSLIPNDQS PEPIFTSNLG LKTDGFDVDC ISDLDFYQRN LLLCGDAASA PLEEDLNFFL 540 LQTEWYNMNF GQQNIDISEC YDPRLVAEAP GYFYDSADYS SVDQSLFIA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-14 | 206 | 256 | 4 | 54 | ARR10-B |
3t6k_A | 5e-13 | 27 | 133 | 7 | 114 | Response regulator receiver |
3t6k_B | 5e-13 | 27 | 133 | 7 | 114 | Response regulator receiver |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0065ss00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428374.1 | 0.0 | PREDICTED: two-component response regulator ARR11-like isoform X1 | ||||
TrEMBL | A0A0S3R192 | 0.0 | A0A0S3R192_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158728.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-113 | response regulator 11 |