PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0065s00110.1
Common NameLR48_Vigan06g107500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 483aa    MW: 52445 Da    PI: 7.5796
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0065s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-39136196262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++k+l+cprC+s++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk+ss
  Vang0065s00110.1 136 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSS 196
                       7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-31124193IPR003851Zinc finger, Dof-type
PfamPF027015.2E-32138194IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.733140194IPR003851Zinc finger, Dof-type
PROSITE patternPS013610142178IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSEAAKDSAI KLFGRTISLP RHNEVSANGS SSEPAPPQDY SHHHSPPSSS SFPREVTSTT  60
NHEPDESDKE PSRKELTSTQ DDEVLHEELK SPTSSCNLEN PKTPSTEIET SLTKSPKKGD  120
QSDTTSASED KTPKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKHC QRYWTAGGTM  180
RNVPVGAGRR KNKNSSSAAS HYRQIMVPET LQNGSLHSAV LTFGSDFPLC DSMASVLNLA  240
EKTQNGVLNG FHSPKHNAST VNNNKTGDDI KSVGASVMAS SLCEKRDNAT SSHEESVDKI  300
YHQGFSPQLC LTGSSSSSSS PWPYPWNPAM ASSAFYQPVS FYPTPAFWRC MPPPSWSLNY  360
QSAPCSGPNS PTLGKHSREG DILFQKPGTE SSSNMAENNN TVLIPKTLRI DDPTEAAKSS  420
IWSTLGIEKE KGNSLNGGGL FKAFASKGGS DDKKNHVVVE ASPVLQANPA ALSRSLVFHE  480
RT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0065s00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425996.10.0PREDICTED: cyclic dof factor 1-like
TrEMBLA0A0L9UT880.0A0A0L9UT88_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2U90.0A0A0S3T2U9_PHAAN; Uncharacterized protein
STRINGXP_007157611.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.13e-88cycling DOF factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]