PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0065s00100.1 | ||||||||
Common Name | LR48_Vigan06g107700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 398aa MW: 43389.6 Da PI: 6.286 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.2e-15 | 130 | 174 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg W + Ed +l+++v+++G+ +W++Ia+++ gR+++ +k++w+ Vang0065s00100.1 130 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSDNAVKNHWHV 174 899*****************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.387 | 125 | 180 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 129 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 129 | 182 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.14E-13 | 130 | 183 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-14 | 130 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-12 | 133 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MISSQQNQNA PTCYPFPSSP SMGMVCADMM GSLSLATVSN ALSSQESFGY GHHHGHASGL 60 ENGRSTSWSF PFMREFLSSN FEDCSDVGAG ESNSNEKTNN NGKFSEESNP NENLLSGKEV 120 DSGHSKLCAR GHWRPAEDSK LKELVALYGP QNWNLIAEKL EGRSDNAVKN HWHVIMARKY 180 REQSSAYRRR RMSQSVYKRV EQNPTFCSRD NASTTEQEPS PSYCLNLLHN GVGVTNNLAS 240 FPSFHGVGSG EVVDFGLNAS LQNMNGVREA MSNTLQVGLR AQAQQAPFDF FSGGGSNDMT 300 GESNGQIRSW ERSNESVQSG LYPHYPQQYL RAMQQLENNT RNNFYSFLNS SSASASTGKE 360 ASSSSACVAG MRDKVVNSDP PDGVPPPFFD FLGVGAT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0065s00100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426992.1 | 0.0 | PREDICTED: myb-related protein Hv33-like | ||||
TrEMBL | A0A0L9USS3 | 0.0 | A0A0L9USS3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T205 | 0.0 | A0A0S3T205_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157609.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 6e-28 | myb domain protein 105 |
Publications ? help Back to Top | |||
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