PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 331aa MW: 36709.8 Da PI: 5.4652

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0064ss00450.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.8	2e-15	191	227	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Vang0064ss00450.1 191 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 227 ***99999**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	1.6E-6	51	86	IPR010399	Tify domain
PROSITE profile	PS51320	13.256	51	86	IPR010399	Tify domain
Pfam	PF06200	1.7E-10	54	85	IPR010399	Tify domain
Pfam	PF06203	5.4E-15	122	163	IPR010402	CCT domain
PROSITE profile	PS51017	12.759	122	164	IPR010402	CCT domain
SMART	SM00401	2.1E-12	185	238	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.893	185	242	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	7.6E-12	187	238	No hit	No description
Gene3D	G3DSA:3.30.50.10	9.0E-15	189	232	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.83E-14	190	233	No hit	No description
PROSITE pattern	PS00344	0	191	218	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.9E-13	191	227	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDTVNNRSQN REEQPPPPGT ALAMVDAFHY SNGSDGGEEA TTPLGHASTA VHARTSELTI 60 SFEGEVYVFP AVTPQKVQAV LLLLGGQETP NTVPTPDFLL QQNSQDIREI NDPSRCSKLS 120 RRIASLVRFR EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ FASLKEDYKS HAENWDSSNA 180 IPGPESTERR CQHCGISEKS TPAMRRGPAG PRSLCNACGL MWANKGTLRD LTKAGRIAFE 240 QNDLDTSADI KPSKAEAEHS CAKQDKEFLI GTAESVTDNL SIQVENHALS LHEQDTLEDL 300 ADASGTEFEI PAGFDEQVDI DDSNMRTYWL *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0064ss00450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-125	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017408631.1	0.0	PREDICTED: GATA transcription factor 19-like
Swissprot	Q8GXL7	9e-65	GAT24_ARATH; GATA transcription factor 24
TrEMBL	A0A0S3R026	0.0	A0A0S3R026_PHAAN; Uncharacterized protein
STRING	XP_007159158.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3319	33	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	3e-57	ZIM-like 1

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376]