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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang0064ss00300.1 |
| Common Name | LR48_Vigan01g079300 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 162aa MW: 18817.7 Da PI: 10.5099 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0064ss00300.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 81.7 | 4.7e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n s rqvtfskRr+g++KKA+ELS+LCda++a+i+fs t kl++y+s
Vang0064ss00300.1 9 KKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYAS 59
68***********************************************86 PP
|
| 2 | K-box | 42.8 | 2.2e-15 | 89 | 160 | 18 | 89 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89
+ + L+k++e +e+R+l GedL+ L+l+eLq++e++L+++l+++ + K+e ++++i++l++k k+ q+
Vang0064ss00300.1 89 SDSNDILRKKVEDKNHELRQLNGEDLQGLTLQELQKIEENLKRGLTNVSKVKDEKVMQEISNLKRKVKSYQN 160
445567999999999****************************************************99886 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 28.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 8.24E-30 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.25E-35 | 3 | 77 | No hit | No description |
| PRINTS | PR00404 | 1.3E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 11.072 | 85 | 161 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 4.3E-13 | 93 | 159 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MTRKRIQIKK IDNISSRQVT FSKRRKGLFK KAQELSTLCD ADIALIVFSA TSKLFDYASS 60
SMQQVIERRD RHSAMHRLDR PSMELQIESD SNDILRKKVE DKNHELRQLN GEDLQGLTLQ 120
ELQKIEENLK RGLTNVSKVK DEKVMQEISN LKRKVKSYQN L*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
